LUQ LTER DATA SETS DOCUMENTATION FORM
ON-LINE VERSION
A DATA SET is a series of observations collected by the same methodology. Each data set should have documentation sufficient for someone unfamiliar with the research to replicate the study. Data sets may be broken into subsets (data files) that are discrete in space and time, in that order. The documentation for a data set should include all spatial and temporal subdivisions of the data.
(Data, Abstract, Methods, Variables)
NOTES
| PERSON(S) COMPLETING THIS FORM: | E-MAIL ADDRESS: |
Juan Felipe Blanco L. |
DATA SET IDENTIFIER:Neritina snails upstream migrations
PROJECT TITLE: Physical habitat, disturbances, and the population ecology of the migratory snail Neritina virginea (Gastropoda: Neritidae) in streams of Puerto Rico (Community Ecology of Streams Snails)
PROJECT DESCRIPTION: Diadromous fauna, migrating between marine and coastal streams is dominant in the neotropics. However, the factors controlling their population distribution and size are poorly understood. The migratory snail Neritina virginea (Gastropoda: Neritidae), abundant in estuaries and coastal rivers in the Caribbean, was studied to understand those factors. The objectives of the study were three-fold: 1) to identify the factors controlling the distribution of diadromous fauna at different spatial scales, 2) to determine patterns and causes of massive upstream migrations and their importance for population persistence, and 3) to integrate this knowledge into conservation strategies for migratory species and stream management plans.
After a survey of 32 coastal streams around Puerto Rico (Greater Antilles), it was evidenced that physical variables operating at different levels of the spatial hierarchy controlled longitudinal distribution of N. virginea. The hierarchically organized variables were river-ocean connectivity (regional scale), instream barriers and water chemistry (stream-network scale), habitat hydraulics (reach scale) and nearbed-flow roughness and depth (habitat scale). However, michohabitat scale distribution depended upon habitat and reach scale context. At habitat scale, water depth in pools, and nearbed flow roughness in riffles were the most important controls. At the reach scale, spatial heterogeneity among and within streambed patches was related to flow refugia, therefore controlling sensitivity of N. virginea density to flooding disturbances.
In addition, the role of structures (bridges) and maintenance activities (downstream channel realignment) associated to road crossings over streams was assessed. By splitting the stream channel and deflecting the flow, bridge pilings altered upstream migration routes. In particular, migratory individuals used more frequently boulder-and-cobble riffle reaches and avoided gravel-bed run reaches. Impact assessment of channel realignment over a 70 m reach in lower Rio Mameyes (NE Puerto Rico) showed that increase in frequency of fine sediment patches contributed to local population depletion and high mortality of juvenile individuals migrating upstream. As a consequence a population located 100 m upstream became isolated and did not recover from a crash caused by a major storm flood occurred after the channel realignment. In conclusion, distribution and size of populations of diadromous fauna such as N. virginea in coastal streams is influenced by hierarchically organized variables. By affecting variables at microhabitat to reach scales, road crossings over streams contribute to reduce longitudinal connectivity, and isolate upstream populations of N. virginea.
LTER
CORE AREAS: Annotate
all that apply (See
online list)
Population dynamics |
Disturbance patterns |
LEF LTER 1 RESEARCH TOPIC: (Annotate all that apply) (See online list)
We define adata file as a component of a data set. A data set can
have only one data file or more. Basically, different data files have different
data structures or format.
DATA
SET FILES (SUBSETS):
1 |
Massive migration events observed at Mameyes River under PR Route 3 bridge |
August, 1, 2000 |
Weekly |
June 30, 2002 |
|
2 |
Snail sizes within migratory aggregations observed in several habitats in Mameyes River near PR Route 3 bridge |
September 29, 2000 |
Irregular |
June 12, 2001 |
|
3 |
Snail size in a split-channel reach under Route 3 bridge in Mameyes River |
May 9, 2000 |
Weekly |
December 12, 2000 |
|
4 |
Snail density in a split-channel reach under Route 3 bridge in Mameyes River |
May 9, 2000 |
Weekly |
December 12, 2000 |
|
5 |
Snail density, size and cohort dynamics in a split-channel reach relative to discharge regime at Mameyes Route 3 |
May 9, 2000 |
Weekly |
December 12, 2000 |
|
6 |
Snail density distribution relative to nearbed-velocity and water depth in a split-channel reach at Mameyes Route 3 |
May 9, 2000 |
Weekly |
December 12, 2000 |
RESEARCH LOCATION: Río Mameyes at intersection with PR Route 3 (Municipality boundary between Luquillo and Río Grande)
Juan Felipe Blanco L. |
| Frederick N. Scatena | fns@sas.upenn.edu |
| Juan Felipe Blanco L. | +57-4-210 5620 | jblanco@lternet.edu |
SOURCE OF FUNDING (SPONSOR): IITF-USDA Forest Service
DATA SET ABSTRACT: This data set includes N. virginea densities and sizes from two channels in lower Río Mameyes under PR Route 3 bridge during the upstream migration season Aug-Dec 2000. Microhabitat use (near-bed water velocities and depth) within both channels is also included. Massive migrations in long trails occurring on the sloped concrete embankment of the main channel were also documented during 99 weeks. Individual size from migratory aggregations was measured during selected dates.
DATA SET METHODS: Snails on and under rocks were counted within 0.5 x 0.5 m quadrats (n=10) placed on the streambed on a weekly basis. Sampling quadrats were placed ˜1 m apart across the main channel (MC), and in five pairs along the side channel (SC). At SC, one quadrat of each pair was placed on the thalweg and another on the shallow part. In addition, a random sample of individuals was collected from each quadrat to measure shell size. Shell size was measured as aperture width (straight line running along the columnella from the base of the operculum to the shell shoulder on body whorl). Total length (TL, perpendicular to AW) is related to aperture width (AW) but cannot be measured in individuals with broken outer lips (TL=1.24AW+0.04, r2=0.98).
Individuals were divided into the following size groups: <4.00 mm (spats), 4.00-6.00 mm (early juveniles), 6.00-8.00 mm (late juveniles), and >8.00 mm (adults). This grouping was based on preliminary field observations indicating distinctive behavior relative to individual size (cf., Pyron and Covich 2003). Spats had small and smooth, dark-brown shells, and were usually found underneath rocks. Juveniles exhibited greenish coloration with a variable pattern of axial lines or small yellow “tongues.” These juveniles were very mobile and were commonly found on the sides of rocks. Adults exhibited the same coloration as juveniles, but moved randomly and were more common on the top of rocks. Sexual maturation was not considered for the grouping because it may be variable in tropical neritids, and it is not easy to determine in small sized individuals.
Each sampling date was classified as either a migration or non-migration event. Migratory events were readily identified becausetdsmall individuals were abundant and aggregated into dense clusters or long trails that persistently moved upstream. All massive migrations appeared a few of days after spates (>2 m3td/s) and increased snail density 2 to 10 times (200 - 800 ind.m-2td) over values observed during non-migration periods (20 - 100 ind.mtd-2). Near-bed water velocity was measured at 2 cm above the streambed using a Marsh-McBirney flowmeter. Each velocity measurement was averaged over 30 s and 3 to 5 measurements were made at each point. Ten points every 1 m were sampled across MC. Paired sampling points (thalweg vs. shallow) were measured in five cross sections along SC.
Snail density, size, cohort percent and occurrence of massive migrations were correlated to discharge regime descriptors calculated using data from USGS gage 50066000 located 50 m upstream of Route 3 bridge.
REFERENCES : Pyron, M., and A. P. Covich. 2003. Migration patterns, densities and growth ofNeritina punctulatasnails in Río Espíritu Santo and Río Mameyes, Northeastern Puerto Rico.Carib. J. Sci. 39:338-347.
CROSS-REFERENCES (other data sets related to this one): LTERDBAS #141: Neritina snails hierarchical distribution; LTERDBAS #140: Neritina snails upstream migrations; LTERDBAS # 151: Neritina snailsrsponses to channel realignment
STORAGE
SITES (of data files): ITES
INVESTIGATOR'S
ASSIGNED KEYWORDS: Neritid snails, diadromy, physical habitat, disturbances, Neotropical
streams
Blanco, J. F. 2005. Physical habitat, disturbances, and the population ecology of the migratory snail Neritina virginea (Gastropoda: Neritidae) in streams of Puerto Rico. Ph. D. Dissertation, University of Puerto Rico, Rio Piedras Campus, Department of Biology. 250 p.
Blanco, J. F. and F. N. Scatena.2005. Floods, Habitat Hydraulics and Upstream Migration of Neritina virginea (Gastropoda: Neritidae) in Northeastern Puerto Rico.td Caribbean Journal of Science,tdVol. 41, No. 1, 55-74
Blanco, J.F. & F. N. Scatena. 2007. The spatial arrangement of Neritina virginea (Gastropoda: Neritidae) during upstream migration. River Research and Applications 23: 235-245.
RESTRICTED UNRESTRICTED X
REASONS TO RESTRICT DATA IN THIS DATA SET BEYOND ITS TWO YEAR POLICY PERIOD*:
*WILL HAVE TO BE APPROVED BY AT LEAST ONE LUQ LTER PRINCIPAL INVESTIGATORS: N. Brokaw, J. ZIMMERMAN, A. LUGO
_X_ "File"
copy only : Data Management will only
file an electronic copy of the data file and its documentation
___ "Enter" data on-line
: Data Management will be in charge
of entering the data on computer files (ContactEda
C. Meléndez)
eographical positional system (GPS) Coordinates for each location:
location |
latitude |
longitude |
Rio Mameyes at intersection with road PR Route 3(bridge 1771) |
18° 22' 27" N |
65° 45' 50" W |
File Name or # above (all in which the variable appears) |
1 |
1 |
1 |
1 |
AbbreviationAbbreviation(as it appears on the data file) |
year |
month |
#weekswithMigrations | groups |
year |
month |
Number of weeks with migrations |
Grouping of observed months |
|
Year of sampling |
Month of sampling |
Number of weeks per month when migration trails occurred along the sloped concrete revetment under PR Route bridge |
Grouping of observed months according to number of weeks with migrations |
|
2000-2002 |
Aug = August, Sep = September, Oct = October, Nov = November, Dec = December, Jan = January, Feb = February, Mar = March, Apr = April, Jun = June, Jul = July |
0-5 |
1 = less than or equal to 1 week/month, 2 = 2 weeks/month, 3 = greater than or equal to 3 weeks/month |
|
integer |
alphabetic |
integer |
integer |
|
File Name or # above (all in which the variable appears) |
1 |
1 |
1 |
1 |
1 |
AbbreviationAbbreviation(as it appears on the data file) |
#gtQ3.5 |
#gtQ18 |
Qmin |
Qmax |
Qmed |
Number of flashfloods per month |
Number of storm flows per month |
Minimum discharge |
Maximum discharge |
Mean discharge |
|
Number of flashfloods greater than 3.5 m3/s per month |
Number of flashfloods greater than 18 m3/s per month |
Minimum daily discharge in m3/s observed during sampling month |
Maximum daily discharge in m3/s observed during sampling month |
Mean daily discharge in m3/s during sampling month |
|
| cubicMetersPerSecond | cubicMetersPerSecond | cubicMetersPerSecond | |||
0,... |
0,... |
0,... |
0,... |
0,... |
|
integer |
integer |
decimal |
decimal |
decimal |
|
none |
none |
none |
none |
none |
File Name or # above (all in which the variable appears) |
1 |
2, 3, 4, 5 |
2 |
2, 3 |
3, 4 |
AbbreviationAbbreviation(as it appears on the data file) |
Qcv |
date |
habitat |
size_mm |
massiveMigrations |
Discharge variability |
Date of sampling |
Habitat where migratory aggregations were observed |
Shell, snail or individual size |
Massive migrations |
|
Coefficient of variation of daily discharge in m3/s during sampling month |
Date of sampling |
Habitat where migratory aggregations were observed along a 200 m reach upstream Route 3 Bridge |
Measurement of shell, snail or individual size as aperture width |
Occurrence of massive migrations either in main (MC) or side (SC) channel |
|
| cubicMetersPerSecond | millimeter |
||||
0.01 |
|||||
0,... |
29/09/2000, 12/06/2001 |
PB = point-bar pool, SC = straight-channel, pool, PL = backflow pool under bridge, R = riffle |
2.43-18.5 |
YES, NO |
|
decimal |
datetime |
alphabetical | decimal |
alphabetical |
|
None |
None |
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
3, 4, 5 |
3, 4 |
4 |
5 |
5 |
AbbreviationAbbreviation(as it appears on the data file) |
stage_ft |
channel |
snailDensity_ind.-m2 |
Qinst_cfs |
Qmed24_cfs |
Stage level |
Channel |
Snail density |
Instantaneous discharge |
Median discharge over past 24 hours |
|
Stage level at USGS gage 50066000 |
Channel location (main or side) under Route 3 bridge |
Number of individuals per m2 at either main (MC) or side (SC) channel |
Discharge at the moment of sampling |
Median discharge over past 24 hours before snail sampling |
|
foot |
numberPerMeterSquared |
cubicFeetPerSecond |
cubicFeetPerSecond |
||
0.02 |
|||||
0,... |
Main, Side |
0,... |
0, ... |
0, ... |
|
decimal |
alphabetical |
decimal |
decimal |
decimal |
|
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
5 |
5 |
5 |
5 |
5 |
AbbreviationAbbreviation(as it appears on the data file) |
#daysAfterQgt1000_cfs |
#daysAfterQgt500_cfs |
#daysAfterQgt100_cfs |
Qgt1000_cfsPast7d |
#Qgt500_cfsPast7d |
Elapsed time since a large flood |
Elapsed time since a large or medium flood |
Elapsed time since a large, medium or flash flood |
Number of large floods during past 7 days |
Number of large or medium floods during past 7 days |
|
Number of days after large flood (Q>1000 cfs) |
Number of days after a large or medium flood (Q>500 cfs) |
Number of days after a large, medium or flash flood (Q>100 cfs) |
Number of large floods during past 7 days |
Number of large or medium floods during past 7 days |
|
|
|
|
|||
0, ... |
0, ... |
0, ... |
0,... |
0,... |
|
integer |
integer |
integer |
integer |
integer |
|
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
5 |
5 |
5 |
5 |
5 |
AbbreviationAbbreviation(as it appears on the data file) |
#Qgt100_cfsPast7d |
#Qgt1000_cfsPast10d |
,#Qgt500_cfsPast10d |
#Qgt100_cfsPast10d |
duration_hrs_lastQgt100_cfs |
Number of large, medium or flash floods during past 7 days |
Number of large floods during past 10 days |
Number of large or medium floods during past 10 days |
Number of large, medium or flash floods during past 10 days |
Duration of last flooding event Q>100cfs |
|
Number of large, medium or flash floods during past 7 days |
Number of large floods during past 10 days |
Number of large or medium floods during past 10 days |
Number of large, medium or flash floods during past 10 days |
Duration in hours of last flooding event Q>100cfs |
|
|
|||||
0,... |
0,... |
0,... |
0,... |
1, ... |
|
Integer |
Integer |
Integer |
Integer |
Integer |
|
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
5 |
5 |
5 |
5 |
5 |
AbbreviationAbbreviation(as it appears on the data file) |
totdensMainChannel_ind.-m2 |
totdenscvMainChannel |
%recMainChannel |
%earlyjuvsMainChannel |
%latejuvsmainChannel |
Total density at Main Channel |
Density variability at Main Channel |
Percent of recruits or spats at Main Channel |
Percent of early juveniles at Main Channel |
Percent of late juveniles at Main Channel |
|
Average density (n=10) at Main channel under Route 3 bridge |
Coefficient of variation of density (n=10) at Main channel under Route 3 bridge |
Percent of recruits (size <4 mm) at Main channel under Route 3 bridge |
Percent of early juveniles (size <4-6 mm) at Main channel under Route 3 bridge |
Percent of late juveniles (size <6-8 mm) at Main channel under Route 3 bridge |
|
numberPerMeterSquared |
|
|
|
|
|
0, ... |
0, ... |
0, ... |
0, ... |
0, ... |
|
decimal |
decimal |
integer |
integer |
integer |
|
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
5 |
5 |
5 |
5 |
5 |
AbbreviationAbbreviation(as it appears on the data file) |
%adultmainChannel |
meansize_mm_mainChannel |
totdenssideChannel_ind.-m2 | totdenscvsideChannel | %recsideChannel |
Percent of adults at Main Channel |
Mean size at Main channel |
Total density at Side Channel |
Density variability at Side Channel |
Percent of recruits or spats at Side Channel |
|
Percent of adults (size >8 mm) at Main channel under Route 3 bridge |
Mean individual size at Main channel under Route 3 bridge |
Average density (n=10) at Side channel under Route 3 bridge |
Coefficient of variation of density (n=10) at Side channel under Route 3 bridge |
Percent of recruits (size <4 mm) at Side channel under Route 3 bridge |
|
|
millimeter |
numberPerMeterSquared |
|
|
|
0, ... |
2.00, ... |
0, ... |
0, ... |
0, ... |
|
integer |
decimal |
decimal |
decimal |
integer |
|
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
5 |
5 |
5 |
5 |
AbbreviationAbbreviation(as it appears on the data file) |
%earlyjuvssideChannel |
%latejuvssideChannel |
%adultsideChannel |
meansize_mm_sideChannel |
Percent of early juveniles at Side Channel |
Percent of late juveniles at Side Channel |
Percent of adults at Side Channel |
Mean size at Side channel |
|
Percent of early juveniles (size <4-6 mm) at Side channel under Route 3 bridge |
Percent of late juveniles (size <6-8 mm) at Side channel under Route 3 bridge |
Percent of adults (size >8 mm) at Main channel under Route 3 bridge |
Mean individual size at Main channel under Route 3 bridge |
|
millimeter |
||||
0, ... |
0, ... |
0, ... |
2.00, ... |
|
integer |
integer |
integer |
decimal |
|
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
6 | 6 |
6 |
6 |
AbbreviationAbbreviation(as it appears on the data file) |
mainChannelDate | mainChannelMassMigrations |
mainChannelsnailDensity_ind.-m2 |
mainChannelWaterVel_m-s |
| Main channel date of measurement | Mainchannel massive migrations |
Snail density in main channel |
Water velocity at main channel |
|
| Date when main channel measurements were taken (mm/dd/yy) | Occurrence of massive migrations in main (MC) channel |
Number of individuals per m2 at main (MC) channel |
Nearbed water velocity (measured 2 cm above streambed) at main (MC) channel |
|
numberPerMeterSquared |
metersPerSecond |
|||
YES, NO |
0,... |
0, ... |
||
| datetime | alphabetical |
decimal |
Decimal |
|
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
6 | 6 |
6 |
6 |
6 |
AbbreviationAbbreviation(as it appears on the data file) |
sideChannelDate | sideChannelMassMigrations |
sideChannelsnailDensity_ind.-m2 |
sideChannelAreainChannel, |
sideChannelWaterVel_m-s |
| Side channel date of measurement | Side channel massive migrations |
Snail density in side channel |
Area in side channel |
Water velocity |
|
| Date when side channel measurements were taken (mm/dd/yy) | Occurrence of massive migrations in side (SC) channel |
Number of individuals per m2 at side (SC) channel |
Channel area relative to water depth: Thalweg: depth >30 cm; Shallow: depth <10 cm |
Nearbed water velocity (measured 2 cm above streambed) at side (SC) channel |
|
numberPerMeterSquared |
metersPerSecond |
||||
YES, NO |
0,... |
Thalweg, shallow |
0, ... |
||
| datetime | alphabetical |
decimal |
Alphanumerical |
Decimal |
|
COMPUTATIONAL METHODS:
| Variable Name | Formula |
| Percent Moisture of sample |
FOR DATA MANAGER USE ONLY
DATE OF LAST REVIEW: April 15, 2009
DATE OF LAST ENTRY : June 30, 2002
STAGE OF DATA SET MANAGEMENT (dates) :
RECEIVED: December 28, 2005
ENTERED: December 28, 2005
FILED ON-LINE: February 6, 2006
REVIEWED BY RESEARCHER
FILING MEDIA :
NAME OF DOCUMENTATION FILE : lterdb140.htm
NAME OF ON - LINE CATALOG : LTERDBAS
RECORD # : 140
DOCUMENT TYPE : binary data only
PRIORITY TO BE ENTERED : N/A
Rev. date of this form: 28 July 200/ 15 July 2001/June 9, 2003/March 16, 2004/12 April 2005/ 8 November 2005