LUQ LTER DATA SETS DOCUMENTATION FORM

ON-LINE VERSION

A DATA SET is a series of observations collected by the same methodology. Each data set should have documentation sufficient for someone unfamiliar with the research to replicate the study. Data sets may be broken into subsets (data files) that are discrete in space and time, in that order. The documentation for a data set should include all spatial and temporal subdivisions of the data.

(Data, Abstract, Methods, Variables)

NOTES

PERSON(S) COMPLETING THIS FORM: E-MAIL ADDRESS:

Juan Felipe Blanco L.

jblanco@lternet.edu

DATA SET IDENTIFIER:Neritina snails upstream migrations

PROJECT TITLE: Physical habitat, disturbances, and the population ecology of the migratory snail Neritina virginea (Gastropoda: Neritidae) in streams of Puerto Rico (Community Ecology of Streams Snails)

PROJECT DESCRIPTION: Diadromous fauna, migrating between marine and coastal streams is dominant in the neotropics. However, the factors controlling their population distribution and size are poorly understood. The migratory snail Neritina virginea (Gastropoda: Neritidae), abundant in estuaries and coastal rivers in the Caribbean, was studied to understand those factors. The objectives of the study were three-fold: 1) to identify the factors controlling the distribution of diadromous fauna at different spatial scales, 2) to determine patterns and causes of massive upstream migrations and their importance for population persistence, and 3) to integrate this knowledge into conservation strategies for migratory species and stream management plans.

After a survey of 32 coastal streams around Puerto Rico (Greater Antilles), it was evidenced that physical variables operating at different levels of the spatial hierarchy controlled longitudinal distribution of N. virginea. The hierarchically organized variables were river-ocean connectivity (regional scale), instream barriers and water chemistry (stream-network scale), habitat hydraulics (reach scale) and nearbed-flow roughness and depth (habitat scale). However, michohabitat scale distribution depended upon habitat and reach scale context. At habitat scale, water depth in pools, and nearbed flow roughness in riffles were the most important controls. At the reach scale, spatial heterogeneity among and within streambed patches was related to flow refugia, therefore controlling sensitivity of N. virginea density to flooding disturbances.

In addition, the role of structures (bridges) and maintenance activities (downstream channel realignment) associated to road crossings over streams was assessed. By splitting the stream channel and deflecting the flow, bridge pilings altered upstream migration routes. In particular, migratory individuals used more frequently boulder-and-cobble riffle reaches and avoided gravel-bed run reaches. Impact assessment of channel realignment over a 70 m reach in lower Rio Mameyes (NE Puerto Rico) showed that increase in frequency of fine sediment patches contributed to local population depletion and high mortality of juvenile individuals migrating upstream. As a consequence a population located 100 m upstream became isolated and did not recover from a crash caused by a major storm flood occurred after the channel realignment. In conclusion, distribution and size of populations of diadromous fauna such as N. virginea in coastal streams is influenced by hierarchically organized variables. By affecting variables at microhabitat to reach scales, road crossings over streams contribute to reduce longitudinal connectivity, and isolate upstream populations of N. virginea.

LTER CORE AREAS: Annotate all that apply (See online list)

Population dynamics

Disturbance patterns

LEF LTER 1 RESEARCH  TOPIC:  (Annotate all that apply) (See online list)

 

We define adata file as a component of a data set. A data set can have only one data file or more. Basically, different data files have different data structures or format.
DATA SET FILES (SUBSETS):

Data File No.

Data File Identifier

On-Line Filename

Starting Date

Periodicity of sample

End Period

1

Massive migration events observed at Mameyes River under PR Route 3 bridge

snailmassivemigrationsMameyesRoute3bridge.txt

August, 1, 2000

Weekly

June 30, 2002

2

Snail sizes within migratory aggregations observed in several habitats in Mameyes River near PR Route 3 bridge

migrantsSnailsSizeMameyesRoute3.txt

September 29, 2000

Irregular

June 12, 2001

3

Snail size in a split-channel reach under Route 3 bridge in Mameyes River

snailsizeunderMameyesRoute3bridge.txt

May 9, 2000

Weekly

December 12, 2000

4

Snail density in a split-channel reach under Route 3 bridge in Mameyes River

snaildensityMameyesRoute3bridge.txt

May 9, 2000

Weekly

December 12, 2000

5

Snail density, size and cohort dynamics in a split-channel reach relative to discharge regime at Mameyes Route 3

snaildynamicsdischargeregimeMameyesRoute3.txt

May 9, 2000

Weekly

December 12, 2000

6

Snail density distribution relative to nearbed-velocity and water depth in a split-channel reach at Mameyes Route 3

snailmigrationMicropathwaysMameyesRoute3bridge.txt

May 9, 2000

Weekly

December 12, 2000

RESEARCH LOCATION: Río Mameyes at intersection with PR Route 3 (Municipality boundary between Luquillo and Río Grande)

INVESTIGATORS:

PRINCIPAL INVESTIGATORS

E-MAIL ADDRESS:

Juan Felipe Blanco L.

jblanco@lternet.edu


OTHER RESEARCHERS

E-MAIL ADDRESS:

Frederick N. Scatena fns@sas.upenn.edu

CONTACT PERSONS

Phone Number (Include area code)

E-MAIL ADDRESS:

Juan Felipe Blanco L. +57-4-210 5620 jblanco@lternet.edu

SOURCE OF FUNDING (SPONSOR): IITF-USDA Forest Service

DATA SET ABSTRACT: This data set includes N. virginea densities and sizes from two channels in lower Río Mameyes under PR Route 3 bridge during the upstream migration season Aug-Dec 2000. Microhabitat use (near-bed water velocities and depth) within both channels is also included. Massive migrations in long trails occurring on the sloped concrete embankment of the main channel were also documented during 99 weeks. Individual size from migratory aggregations was measured during selected dates. 

DATA SET METHODS: Snails on and under rocks were counted within 0.5 x 0.5 m quadrats (n=10) placed on the streambed on a weekly basis.  Sampling quadrats were placed ˜1 m apart across the main channel (MC), and in five pairs along the side channel (SC). At SC, one quadrat of each pair was placed on the thalweg and another on the shallow part.  In addition, a random sample of individuals was collected from each quadrat to measure shell size. Shell size was measured as aperture width (straight line running along the columnella from the base of the operculum to the shell shoulder on body whorl). Total length (TL, perpendicular to AW) is related to aperture width (AW) but cannot be measured in individuals with broken outer lips (TL=1.24AW+0.04, r2=0.98).

Individuals were divided into the following size groups: <4.00 mm (spats), 4.00-6.00 mm (early juveniles), 6.00-8.00 mm (late juveniles), and >8.00 mm (adults). This grouping was based on preliminary field observations indicating distinctive behavior relative to individual size (cf., Pyron and Covich 2003). Spats had small and smooth, dark-brown shells, and were usually found underneath rocks. Juveniles exhibited greenish coloration with a variable pattern of axial lines or small yellow “tongues.” These juveniles were very mobile and were commonly found on the sides of rocks. Adults exhibited the same coloration as juveniles, but moved randomly and were more common on the top of rocks. Sexual maturation was not considered for the grouping because it may be variable in tropical neritids, and it is not easy to determine in small sized individuals.

Each sampling date was classified as either a migration or non-migration event.  Migratory events were readily identified becausetdsmall individuals were abundant and aggregated into dense clusters or long trails that persistently moved upstream.  All massive migrations appeared a few of days after spates (>2 m3td/s) and increased snail density 2 to 10 times (200 - 800 ind.m-2td) over values observed during non-migration periods (20 - 100 ind.mtd-2).  Near-bed water velocity was measured at 2 cm above the streambed using a Marsh-McBirney flowmeter.  Each velocity measurement was averaged over 30 s and 3 to 5 measurements were made at each point.  Ten points every 1 m were sampled across MC.  Paired sampling points (thalweg vs. shallow) were measured in five cross sections along SC.

Snail density, size, cohort percent and occurrence of massive migrations were correlated to discharge regime descriptors calculated using data from USGS gage 50066000 located 50 m upstream of Route 3 bridge.

REFERENCES : Pyron, M., and A. P. Covich. 2003. Migration patterns, densities and growth ofNeritina punctulatasnails in Río Espíritu Santo and Río Mameyes, Northeastern Puerto Rico.Carib. J. Sci. 39:338-347.

CROSS-REFERENCES (other data sets related to this one): LTERDBAS #141: Neritina snails hierarchical distribution; LTERDBAS #140: Neritina snails upstream migrations; LTERDBAS # 151: Neritina snailsrsponses to channel realignment

SAMPLE LOCATION:NA

STORAGE SITES (of data files): ITES

INVESTIGATOR'S ASSIGNED KEYWORDSNeritid snails, diadromy, physical habitat, disturbances, Neotropical streams

LEF LTER OFFICIAL KEYWORDS  (See table):Q. Mameyes, river, discharge, droughts, floods, road, population dynamics, seasonality, colonization, aquatic gastropods (mollusks), dissertation, peer reviewed journal.

PUBLICATIONS :

Blanco, J. F. 2005. Physical habitat, disturbances, and the population ecology of the migratory snail Neritina virginea (Gastropoda: Neritidae) in streams of Puerto Rico. Ph. D. Dissertation, University of Puerto Rico, Rio Piedras Campus, Department of Biology. 250 p.

Blanco, J. F. and F. N. Scatena.2005. Floods, Habitat Hydraulics and Upstream Migration of Neritina virginea (Gastropoda: Neritidae) in Northeastern Puerto Rico.td Caribbean Journal of Science,tdVol. 41, No. 1, 55-74

Blanco, J.F. & F. N. Scatena. 2007. The spatial arrangement of Neritina virginea (Gastropoda: Neritidae) during upstream migration. River Research and Applications 23: 235-245.

DISSEMINATION :

RESTRICTED UNRESTRICTED X

REASONS TO RESTRICT DATA IN THIS DATA SET BEYOND ITS TWO YEAR POLICY PERIOD*:

*WILL HAVE TO BE APPROVED BY  AT LEAST ONE LUQ LTER PRINCIPAL INVESTIGATORS: N. Brokaw, J. ZIMMERMAN, A. LUGO

FILING

_X_ "File" copy only : Data Management will only file an electronic copy of the data file and its documentation 
___ "Enter" data on-line : Data Management will be in charge of entering the data on computer files  (ContactEda C. Meléndez)

SITES DESCRIPTIONS:

eographical positional system (GPS) Coordinates for each location:

location

latitude

longitude

Rio Mameyes at intersection with road PR Route 3(bridge 1771)

18° 22' 27" N

65° 45' 50" W


VARIABLES(ATTRIBUTES):

File Name or # above (all in which the variable appears)

1

1

1

1

AbbreviationAbbreviation(as it appears on the data file)

year

month

#weekswithMigrations groups

NAME OF VARIABLE

year

month

Number of weeks with migrations

Grouping of observed months

DEFINITION OF VARIABLE

Year of sampling

Month of sampling

Number of weeks per month when migration trails occurred along the sloped concrete revetment under PR Route bridge

Grouping of observed months according to number of weeks with migrations

UNIT

       

PRECISION

       

RANGE OR LIST OF VALUES

2000-2002

Aug = August, Sep = September, Oct = October, Nov = November, Dec = December, Jan = January, Feb = February, Mar = March, Apr = April, Jun = June, Jul = July

0-5

1 = less than or equal to 1 week/month, 2 = 2 weeks/month, 3 = greater than or equal to 3 weeks/month

DATA TYPE

integer

alphabetic

integer

integer

MISSING DATA CODES

       

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

1

1

1

1

1

AbbreviationAbbreviation(as it appears on the data file)

#gtQ3.5

#gtQ18

Qmin

Qmax

Qmed

NAME OF VARIABLE

Number of flashfloods per month

Number of storm flows per month

Minimum discharge

Maximum discharge

Mean discharge

DEFINITION OF VARIABLE

Number of flashfloods greater than 3.5 m3/s per month

Number of flashfloods greater than 18 m3/s per month

Minimum daily discharge in m3/s observed during sampling month

Maximum daily discharge in m3/s observed during sampling month

Mean daily discharge in m3/s during sampling month

UNIT

    cubicMetersPerSecond cubicMetersPerSecond cubicMetersPerSecond

PRECISION

         

RANGE OR LIST OF VALUES

0,...

0,...

0,...

0,...

0,...

DATA TYPE

integer

integer

decimal

decimal

decimal

MISSING DATA CODES

none

none

none

none

none


VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

1

2, 3, 4, 5

2

2, 3

3, 4

AbbreviationAbbreviation(as it appears on the data file)

Qcv

date

habitat

size_mm

massiveMigrations

NAME OF VARIABLE

Discharge variability

Date of sampling

Habitat where migratory aggregations were observed

Shell, snail or individual size

Massive migrations

DEFINITION OF VARIABLE

Coefficient of variation of daily discharge in m3/s during sampling month

Date of sampling

Habitat where migratory aggregations were observed along a 200 m reach upstream Route 3 Bridge

Measurement of shell, snail or individual size as aperture width

Occurrence of massive migrations either in main (MC) or side (SC) channel

UNIT

cubicMetersPerSecond    

millimeter

 

PRECISION

     

0.01

 

RANGE OR LIST OF VALUES

0,...

29/09/2000, 12/06/2001

PB = point-bar pool, SC = straight-channel, pool, PL = backflow pool under bridge, R = riffle

2.43-18.5

YES, NO

DATA TYPE

decimal

datetime

alphabetical

decimal

alphabetical

MISSING DATA CODES

None

None

     

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

3, 4, 5

3, 4

4

5

5

AbbreviationAbbreviation(as it appears on the data file)

stage_ft

channel

snailDensity_ind.-m2

Qinst_cfs

Qmed24_cfs

NAME OF VARIABLE

Stage level

Channel

Snail density

Instantaneous discharge

Median discharge over past 24 hours

DEFINITION OF VARIABLE

Stage level at USGS gage 50066000

Channel location (main or side) under Route 3 bridge

Number of individuals per m2 at either main (MC) or side (SC) channel

Discharge at the moment of sampling

Median discharge over past 24 hours before snail sampling

UNIT

foot

 

numberPerMeterSquared

cubicFeetPerSecond

cubicFeetPerSecond

PRECISION

0.02

       

RANGE OR LIST OF VALUES

0,...

Main, Side

0,...

0, ...

0, ...

DATA TYPE

decimal

alphabetical

decimal

decimal

decimal

MISSING DATA CODES

         

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

5

5

5

5

5

AbbreviationAbbreviation(as it appears on the data file)

#daysAfterQgt1000_cfs

#daysAfterQgt500_cfs

#daysAfterQgt100_cfs

Qgt1000_cfsPast7d

#Qgt500_cfsPast7d

NAME OF VARIABLE

Elapsed time since a large flood

Elapsed time since a large or medium flood

Elapsed time since a large, medium or flash flood

Number of large floods during past 7 days

Number of large or medium floods during past 7 days

DEFINITION OF VARIABLE

Number of days after large flood (Q>1000 cfs)

Number of days after a large or medium flood (Q>500 cfs)

Number of days after a large, medium or flash flood (Q>100 cfs)

Number of large floods during past 7 days

Number of large or medium floods during past 7 days

UNIT

 

 

 

   

PRECISION

         

RANGE OR LIST OF VALUES

0, ...

0, ...

0, ...

0,...

0,...

DATA TYPE

integer

integer

integer

integer

integer

MISSING DATA CODES

         

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

5

5

5

5

5

AbbreviationAbbreviation(as it appears on the data file)

#Qgt100_cfsPast7d

#Qgt1000_cfsPast10d

,#Qgt500_cfsPast10d

#Qgt100_cfsPast10d

duration_hrs_lastQgt100_cfs

NAME OF VARIABLE

Number of large, medium or flash floods during past 7 days

Number of large floods during past 10 days

Number of large or medium floods during past 10 days

Number of large, medium or flash floods during past 10 days

Duration of last flooding event Q>100cfs

DEFINITION OF VARIABLE

Number of large, medium or flash floods during past 7 days

Number of large floods during past 10 days

Number of large or medium floods during past 10 days

Number of large, medium or flash floods during past 10 days

Duration in hours of last flooding event Q>100cfs

UNIT

       

 

PRECISION

         

RANGE OR LIST OF VALUES

0,...

0,...

0,...

0,...

1, ...

DATA TYPE

Integer

Integer

Integer

Integer

Integer

MISSING DATA CODES

         

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

5

5

5

5

5

AbbreviationAbbreviation(as it appears on the data file)

totdensMainChannel_ind.-m2

totdenscvMainChannel

%recMainChannel

%earlyjuvsMainChannel

%latejuvsmainChannel

NAME OF VARIABLE

Total density at Main Channel

Density variability at Main Channel

Percent of recruits or spats at Main Channel

Percent of early juveniles at Main Channel

Percent of late juveniles at Main Channel

DEFINITION OF VARIABLE

Average density (n=10) at Main channel under Route 3 bridge

Coefficient of variation of density (n=10) at Main channel under Route 3 bridge

Percent of recruits (size <4 mm) at Main channel under Route 3 bridge

Percent of early juveniles (size <4-6 mm) at Main channel under Route 3 bridge

Percent of late juveniles (size <6-8 mm) at Main channel under Route 3 bridge

UNIT

numberPerMeterSquared

 

 

 

 

PRECISION

         

RANGE OR LIST OF VALUES

0, ...

0, ...

0, ...

0, ...

0, ...

DATA TYPE

decimal

decimal

integer

integer

integer

MISSING DATA CODES

         

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

5

5

5

5

5

AbbreviationAbbreviation(as it appears on the data file)

%adultmainChannel

meansize_mm_mainChannel

totdenssideChannel_ind.-m2 totdenscvsideChannel

%recsideChannel

NAME OF VARIABLE

Percent of adults at Main Channel

Mean size at Main channel

Total density at Side Channel

Density variability at Side Channel

Percent of recruits or spats at Side Channel

DEFINITION OF VARIABLE

Percent of adults (size >8 mm) at Main channel under Route 3 bridge

Mean individual size at Main channel under Route 3 bridge

Average density (n=10) at Side channel under Route 3 bridge

Coefficient of variation of density (n=10) at Side channel under Route 3 bridge

Percent of recruits (size <4 mm) at Side channel under Route 3 bridge

UNIT

 

millimeter

numberPerMeterSquared

 

 

PRECISION

         

RANGE OR LIST OF VALUES

0, ...

2.00, ...

0, ...

0, ...

0, ...

DATA TYPE

integer

decimal

decimal

decimal

integer

MISSING DATA CODES

         

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

5

5

5

5

AbbreviationAbbreviation(as it appears on the data file)

%earlyjuvssideChannel

%latejuvssideChannel

%adultsideChannel

meansize_mm_sideChannel

NAME OF VARIABLE

Percent of early juveniles at Side Channel

Percent of late juveniles at Side Channel

Percent of adults at Side Channel

Mean size at Side channel

DEFINITION OF VARIABLE

Percent of early juveniles (size <4-6 mm) at Side channel under Route 3 bridge

Percent of late juveniles (size <6-8 mm) at Side channel under Route 3 bridge

Percent of adults (size >8 mm) at Main channel under Route 3 bridge

Mean individual size at Main channel under Route 3 bridge

UNIT

     

millimeter

PRECISION

       

RANGE OR LIST OF VALUES

0, ...

0, ...

0, ...

2.00, ...

DATA TYPE

integer

integer

integer

decimal

MISSING DATA CODES

       

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

6

6

6

6

AbbreviationAbbreviation(as it appears on the data file)

mainChannelDate

mainChannelMassMigrations

mainChannelsnailDensity_ind.-m2

mainChannelWaterVel_m-s

NAME OF VARIABLE

Main channel date of measurement

Mainchannel massive migrations

Snail density in main channel

Water velocity at main channel

DEFINITION OF VARIABLE

Date when main channel measurements were taken (mm/dd/yy)

Occurrence of massive migrations in main (MC) channel

Number of individuals per m2 at main (MC) channel

Nearbed water velocity (measured 2 cm above streambed) at main (MC) channel

UNIT

   

numberPerMeterSquared

metersPerSecond

PRECISION

       

RANGE OR LIST OF VALUES

 

YES, NO

0,...

0, ...

DATA TYPE

datetime

alphabetical

decimal

Decimal

MISSING DATA CODES

       

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

6

6

6

6

6

AbbreviationAbbreviation(as it appears on the data file)

sideChannelDate

sideChannelMassMigrations

sideChannelsnailDensity_ind.-m2

sideChannelAreainChannel,

sideChannelWaterVel_m-s

NAME OF VARIABLE

Side channel date of measurement

Side channel massive migrations

Snail density in side channel

Area in side channel

Water velocity

DEFINITION OF VARIABLE

Date when side channel measurements were taken (mm/dd/yy)

Occurrence of massive migrations in side (SC) channel

Number of individuals per m2 at side (SC) channel

Channel area relative to water depth: Thalweg: depth >30 cm; Shallow: depth <10 cm

Nearbed water velocity (measured 2 cm above streambed) at side (SC) channel

UNIT

   

numberPerMeterSquared

 

metersPerSecond

PRECISION

         

RANGE OR LIST OF VALUES

 

YES, NO

0,...

Thalweg, shallow

0, ...

DATA TYPE

datetime

alphabetical

decimal

Alphanumerical

Decimal

MISSING DATA CODES

         

COMPUTATIONAL METHODS:

Variable Name Formula
Percent Moisture of sample  


FOR DATA MANAGER USE ONLY

DATE OF LAST REVIEW: April 15, 2009

DATE OF LAST ENTRY : June 30, 2002

STAGE OF DATA SET MANAGEMENT (dates) :
RECEIVED: December 28, 2005
ENTERED: December 28, 2005
FILED ON-LINE: February 6, 2006
REVIEWED BY RESEARCHER

FILING MEDIA :
NAME OF DOCUMENTATION FILE : lterdb140.htm
NAME OF ON - LINE CATALOG : LTERDBAS
RECORD # :   140
DOCUMENT TYPE : binary data only
PRIORITY TO BE ENTERED :  N/A

Rev. date of this form: 28 July 200/ 15 July  2001/June 9, 2003/March 16, 2004/12 April 2005/ 8 November 2005