LUQ LTER DATA SETS DOCUMENTATION FORM

ON-LINE VERSION

A DATA SET is a series of observations collected by the same methodology. Each data set should have documentation sufficient for someone unfamiliar with the research to replicate the study. Data sets may be broken into subsets (data files) that are discrete in space and time, in that order. The documentation for a data set should include all spatial and temporal subdivisions of the data.

(Data, Abstract, Methods, Variables)

NOTES

PERSON(S) COMPLETING THIS FORM: E-MAIL ADDRESS:

Juan Felipe Blanco L.

jblanco@lternet.edu

DATA SET IDENTIFIERNeritina snails hierarchical distribution

PROJECT TITLE : Physical habitat, disturbances, and the population ecology of the migratory snail Neritina virginea (Gastropoda: Neritidae) in streams of Puerto Rico (Community Ecology of Streams Snails)



PROJECT DESCRIPTION :Diadromous fauna, migrating between marine and coastal streams is dominant in the neotropics. However, the factors controlling their population distribution and size are poorly understood. The migratory snail Neritina virginea (Gastropoda: Neritidae), abundant in estuaries and coastal rivers in the Caribbean, was studied to understand those factors. The objectives of the study were three-fold: 1) to identify the factors controlling the distribution of diadromous fauna at different spatial scales, 2) to determine patterns and causes of massive upstream migrations and their importance for population persistence, and 3) to integrate this knowledge into conservation strategies for migratory species and stream management plans.

After a survey of 32 coastal streams around Puerto Rico (Greater Antilles), it was evidenced that physical variables operating at different levels of the spatial hierarchy controlled longitudinal distribution of N. virginea. The hierarchically organized variables were river-ocean connectivity (regional scale), instream barriers and water chemistry (stream-network scale), habitat hydraulics (reach scale) and nearbed-flow roughness and depth (habitat scale). However, michohabitat scale distribution depended upon habitat and reach scale context. At habitat scale, water depth in pools, and nearbed flow roughness in riffles were the most important controls. At the reach scale, spatial heterogeneity among and within streambed patches was related to flow refugia, therefore controlling sensitivity of N. virginea density to flooding disturbances.

In addition, the role of structures (bridges) and maintenance activities (downstream channel realignment) associated to road crossings over streams was assessed. By splitting the stream channel and deflecting the flow, bridge pilings altered upstream migration routes. In particular, migratory individuals used more frequently boulder-and-cobble riffle reaches and avoided gravel-bed run reaches. Impact assessment of channel realignment over a 70 m reach in lower Rio Mameyes (NE Puerto Rico) showed that increase in frequency of fine sediment patches contributed to local population depletion and high mortality of juvenile individuals migrating upstream. As a consequence a population located 100 m upstream became isolated and did not recover from a crash caused by a major storm flood occurre after the channel realignment. In conclusion, distribution and size of populations of diadromous fauna such as N. virginea in coastal streams is influenced by hierarchically organized variables. By affecting variables at microhabitat to reach scales, road crossings over streams contribute to reduce longitudinal connectivity, and isolate upstream populations of N. virginea.

LTER CORE AREAS: Annotate all that apply (See online list)

Population dynamics

Disturbance patterns

LEF LTER 1 RESEARCH  TOPIC:  (Annotate all that apply) (See online list)

 


We define a data file as a component of a data set. A data set can have only one data file or more. Basically, different data files have different data structures or format.
DATA SET FILES (SUBSETS):

Data File No.

Data File Identifier

On-Line Filename

Starting Date Periodicity of sample

End Period
1

microhabitat distribution at Mameyes upstream Route 3

microhabitatdistributionatMameyesupstreamRoute3.txt 3 August 22, 2000 weekly

December 12, 2000

2

habitat distribution at Mameyes upstream Route 3

habitatdistributionatMameyesupstreamRoute3.txt August 22, 2000 weekly

December 12, 2000

3

Water chemistry and snail distribution at stream-networks

waterchemistryandsnaildistribution.txt January 6, 2001 Biannual

January 9, 2003

4

Snail distribution around Puerto Rico

islanddistribution.txt January 6, 2001

Biannual

January 9, 2003

RESEARCH LOCATION: Rio Mameyes at intersection with PR Route 3 (Municipality boundary between Luquillo and Rio Grande), and 32 rivers around the island directly connected to the ocean

INVESTIGATORS:

PRINCIPAL INVESTIGATORS

E-MAIL ADDRESS:

Juan Felipe Blanco L.

jblanco@LTERnet.edu


Other Researchers

E-MAIL ADDRESS:

Frederick N. Scatena

fns@sas.upenn.edu


CONTACT PERSONS

Phone Number
(Include area code)

E-MAIL ADDRESS:

Juan Felipe Blanco L.

+57-4-210 5620

jblanco@LTERnet.edu


SOURCE OF FUNDING (SPONSOR)
:  IITF-USDA Forest Service, LTER, Organization for Tropical Studies (OTS)

DATA SET ABSTRACT: This data set includes N. virginea densities and sizes relative to streambed substrate type, water depth, and habitat type in a low land reach in Rio Mameyes near PR Route 3 bridge, and presence and inland extent of distribution of in 32 coastal rivers around the island. Hydrologic and water chemistry variables are reported as predictors of snail distribution at regional and stream-network scales.

DATA SET METHODS: Snails were collected, counted, and measured within 0.5 x 0.5 m quadrats placed on the streambed as described in data set "Neritina snails upstream migrations":  Snails on and under rocks were counted within 0.5 x 0.5 m quadrats (n=10) placed on the streambed on a weekly basis.  Sampling quadrats were placed ˜1 m apart across the main channel (MC), and in five pairs along the side channel (SC). At SC, one quadrat of each pair was placed on the thalweg and another on the shallow part.  In addition, a random sample of individuals was collected from each quadrat to measure shell size. Shell size was measured as aperture width (straight line running along the columnella from the base of the operculum to the shell shoulder on body whorl). Total length (TL, perpendicular to AW) is related to aperture width (AW) but cannot be measured in individuals with broken outer lips (TL=1.24AW+0.04, r2=0.98).

Four habitats (point-bar and straight channel pools, a riffle, and a high flow pond) in Rio Mameyes near Route 3 Bridge were weekly sampled between August and December 2000. Water depth and substrate type were measured within each quadrat. The three-most abundant substrates were classified as boulders, cobbles, pebbles, gravel or sand/fines. Plots covered >1/3 by Elodea were classified as “mats”. Nearbed water velocity was measured along cross-sections within each habitat as described in the data set "Neritina snails upstream migrations".  In addition, the presence and inland extent of distribution of N. virginea were surveyed in 32 coastal rivers around the island during summer 2001 and 2003. Water chemistry and river discharge data were obtained from the US Geological Survey (http://nwis.waterdata.usgs.gov/usa/nwis/).

REFERENCES :

Pyron, M., and A. P. Covich. 2003. Migration patterns, densities and growth of Neritina punctulata snails in Rio Espíritu Santo and Rio Mameyes, Northeastern Puerto Rico. Caribbean Journal of Science 39:338-347.

Blanco, J. F. and F. N. Scatena. 2005. Floods, Habitat Hydraulics and Upstream Migration of Neritina virginea (Gastropoda: Neritidae) in Northeastern Puerto Rico. Caribbean Journal of Science, 41: 55-74

CROSS-REFERENCES (other data sets related to this one):  LTERDB140: Neritina snails upstream migrations

SAMPLE LOCATION :  NA

STORAGE SITES (of data files): ITES

INVESTIGATOR'S ASSIGNED KEYWORDS: freshwater gastropods, tropical streams, spatial hierarchies, landscape filters, downstream–upstream linkages

LEF LTER OFFICIAL KEYWORDS(See table):Q. Mameyes, river, discharge, population dynamics, carbon, nitrogen, phosphorus, cations, anions, other chemicals, environmental variables, human, aquatic gastropods (mollusks), dissertation, peer reviewed journal.

PUBLICATIONS :

Blanco, J. F. 2005. Physical habitat, disturbances, and the population ecology of the migratory snail Neritina virginea (Gastropoda: Neritidae) in streams of Puerto Rico. Ph. D. Dissertation, University of Puerto Rico, Rio Piedras Campus, Department of Biology. 250 p.

Blanco, J. F. and F. N. Scatena. 2006. Hierarchical contribution of river–ocean connectivity, water chemistry, hydraulics, and substrate to the distribution of diadromous snails in Puerto Rican streams Journal of the North American Benthological Society, Vol. 25, No. 1

DISSEMINATION : UNRESTRICTED

RESTRICTED UNRESTRICTED

REASONS TO RESTRICT DATA IN THIS DATA SET BEYOND ITS TWO YEAR POLICY PERIOD*:

*WILL HAVE TO BE APPROVED BY  AT LEAST ONE LUQ LTER PRINCIPAL INVESTIGATORS: N. Brokaw, A. LUGO

FILING

_X_ "File" copy only : Data Management will only file an electronic copy of the data file and its documentation 
___ "Enter" data on-line : Data Management will be in charge of entering the data on computer files  (Contact Eda C. Meléndez)

SITES DESCRIPTIONS:

Geographical positional system (GPS) Coordinates for each location:

location

latitude

longitude

Rio Mameyes at intersection with road PR Route 3 (bridge 1771)

18° 22' 27" N

65° 45' 50" W


VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

1, 2

1, 2

1, 2

1, 2

1

1

AbbreviationAbbreviation(as it appears on the data file)

DATE

densityDate

STAGELEVEL_ft

HABITAT

WATERDEPTH_cm

SUBSTRATES

NAME OF VARIABLE

Date of sampling

Date of density calculation

Stage level

 

Habitat

Water depth

Dominant substrates

DEFINITION OF VARIABLE

Date of sampling (mm/dd/yy)

Date of density calculation (mm/dd/yy)

Stage level at USGS gage 50066000

Channel unit with distinctive hydraulics and morphology at a scale of 101 m2

Water depth

Three-most abundant substrate categories

UNIT

   

foot

  centimeter  

PRECISION

   

0.02

  0.1

 

RANGE OR LIST OF VALUES

8/22/2000, 12/12/2002

8/22/2000,, 12/12/2002

0,…

PB = point-bar pool, SC = straight-channel pool, HFP = high flow pond, R = riffle

10.2,..,139.7

B = boulders; diameter >256 mm, C = cobbles; diameter 256–64 mm, P = pebbles; diameter 64–16 mm, G = gravel and finer; diameter <16 mm, M = Elodea mats

DATA TYPE

datetime datetime

decimal

alphabetic

decimal

alphanumeric

MISSING DATA CODES

         

 

 

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

1, 4

2 2 2

2

AbbreviationAbbreviation(as it appears on the data file)

SNAILDENSITY_ind.-m2

SIZE-DATE SIZE-STAGELEVEL_ft SIZE-HABITAT

SIZE_mm

NAME OF VARIABLE

snail density, mean snail density

Date of measurement

Stage level when measured

Habitat when measured

Shell, snail or individual size

DEFINITION OF VARIABLE

Number of individuals per m2

Date in which snail sampled was measured (mm/dd/yy)

Stage level at USGS gage 50066000 when measurement was performed

Observed channel unit with distinctive hydraulics and morphology at a scale of 101 m2

Measurement of shell, snail or individual size

UNIT

numberPerMeterSquared   foot   millimeter

PRECISION

 

      0.05

RANGE OR LIST OF VALUES

0,...    

PB = point-bar pool, SC = straight-channel pool, HFP = high flow pond, R = riffle

 

DATA TYPE

decimal

datetime decimal

alphabetic

decimal

MISSING DATA CODES

 

       

 

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

3, 4

3

3

3

AbbreviationAbbreviation(as it appears on the data file)

RIVER

USGSgage

geoCoordinateLati_NAD27

geoCoordinateLong_NAD27

NAME OF VARIABLE

River

USGS gage

Geographic coordinates (Latitude)

Geographic coordinates

DEFINITION OF VARIABLE

River sampled for snail distribution and location of water chemistry or discharge station

USGS water quality station

Geographic coordinate, Latitude, of USGS gages in study rivers (deg/min/sec)

Geographic coordinates, Longitude, of USGS gages in study rivers

UNIT

 

 

degree minute second

degree minute second

PRECISION

 

 

 

 

RANGE OR LIST OF VALUES

Yaguez, Añasco, Culebrinas, Guajataca, Camuy, Arecibo, Manati, Cibuco, La Plata, Bayamon (Hondo), Blasina, Loiza, Espiritu Santo, Mameyes, Sabana, Fajardo, Blanco, Humacao, Guayanes, Maunabo, Patillas, Nigua, Guamani, Jueyes, Coamo, Descalabrado, Cañas, Jacaguas, Portugues, Guayanilla, Loco, Guanajibo

 

50011400, 50027750, 50038100, 50039500, 50046000, 50048510, 50063800, 50071000, 50072500, 50082000, 50083500, 50091800, 50092000, 50106500, 50115000, 50129700, 50133600, 50138800, 50144000, 50146000, 50147600, 50149100

 

 

DATA TYPE

alphabetic

integer

alphanumeric

alphanumeric

MISSING DATA CODES

 

Blank or NA

 

 

 

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

3

3

3

3

3

AbbreviationAbbreviation(as it appears on the data file)

drainageArea_mi2

gageDatum_ft_asl

recordRange

numberofEntries

temperature_C

NAME OF VARIABLE

Drainage area

Gage datum

Record range

Number of sampling dates

Temperature

DEFINITION OF VARIABLE

Drainage area above gage

Elevation of gage above mean sea level NGVD29

Extent of years used to compute average water quality parameters from gage (yyyy-yyyy)

Number of sampling dates available within record range used to compute variable average

Average water temperature in Celsius degrees

UNIT

squareMile

foot

 

 

celsius

PRECISION

 

       

RANGE OR LIST OF VALUES

0,…

0,…

1990 - 2001

2,.., 58

0,…

DATA TYPE

decimal

decimal

alphanumeric

integer

decimal

MISSING DATA CODES

 

       

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

3, 4

3

3

3

3

AbbreviationAbbreviation(as it appears on the data file)

discharge_m3-s

turbidity_NTU

conductivity_microS-cm

dissolvedOxygen_mg-l

dissolvedOxygenSaturation_%

NAME OF VARIABLE

River discharge

Water Turbidity

Water conductivity

Dissolved oxygen concentration in water

Dissolved oxygen saturation in water

DEFINITION OF VARIABLE

Average river discharge

Average water turbidity

Average water conductivity

Average dissolved oxygen concentration

Average percentage of dissolved oxygen saturation

UNIT

cubicMetersPerSecond

nephelometric turbidity units (NTU)

micro Siemens per centimeters

milligramsPerLiter

 

PRECISION

        

RANGE OR LIST OF VALUES

0, …

0, …

0, …

0, …

0,…

DATA TYPE

decimal decimal decimal decimal decimal

MISSING DATA CODES

 

       

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

3

3

3

3

3

AbbreviationAbbreviation(as it appears on the data file)

pH

acidNeutCapac_mgCaCO3-l

totalSuspendedSolids_mg-l

NH4_mg-l

NO2+NO3_mg-l

NAME OF VARIABLE

Water pH

Acid Neutralizing Capacity of water

Concentration of total suspended solids in water

Ammonium concentration in water

Nitrite+Nitrate concentration in water

DEFINITION OF VARIABLE

Average water pH

Average Acid Neutralizing Capacity or Alcalinity

Average concentration of total suspended solids

Average NH4 concentration

Average NO2+NO3 >concentration

UNIT

 

milligramsPerLiter

milligramsPerLiter

milligramsPerLiter

milligramsPerLiter

PRECISION

         

RANGE OR LIST OF VALUES

0,...

0,...

0,...

0, …

0, …

DATA TYPE

decimal

decimal

decimal

decimal

decimal

MISSING DATA CODES

       

 

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

3

3

3

3

3

AbbreviationAbbreviation(as it appears on the data file)

P_mg-l

Ca_mg-l

Mg_mg-l

Na_mg-l

K_mg-l

NAME OF VARIABLE

Total phosphorus concentration in water

Calcium concentration in water

Magnesium concentration in water

Sodium concentration in water

Potassium concentration in water

DEFINITION OF VARIABLE

Average P concentration

Average Ca concentration

Average Mg concentration

Average Na concentration

Average K concentration

UNIT

milligramsPerLiter

milligramsPerLiter

milligramsPerLiter

milligramsPerLiter

milligramsPerLiter

PRECISION

         

RANGE OR LIST OF VALUES

0, …

0, …

0, …

0, …

0, …

DATA TYPE

decimal

decimal

decimal

decimal

decimal

MISSING DATA CODES

         

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

3

3

3

3

3

AbbreviationAbbreviation(as it appears on the data file)

Cl_mg-l

SO4_mg-l SiO2_mg-l SNAIL_POPULATIONSINLAND_EXTENT 

NAME OF VARIABLE

Chloride concentration in water

Sulphate concentration in water

Silicate concentration in water

Snail populations

Inland extent

DEFINITION OF VARIABLE

Average Cl concentration

Average SO4 concentration

Average SiO2 concentration

Presence or absence of snail populations in river documented in surveys in summers 2001 and 2003 Inland extent of snail populations in river documented in surveys in summers 2001 and 2003

UNIT

milligramsPerLiter

milligramsPerLiter

milligramsPerLiter

   

PRECISION

         

RANGE OR LIST OF VALUES

0,...

0,...

0,...

Present, Absent Absent, Estuary/River mouth, Coastal Plain

Mountains

DATA TYPE

decimal

decimal

decimal

alphabetic

alphabetic

MISSING DATA CODES

         

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

4

4

4

4

4

AbbreviationAbbreviation(as it appears on the data file)

REGION siteName

meanSnailSize_mm

rivermouthConnecttoOcean

nearestUSGSgage

NAME OF VARIABLE

Region

Site name

Shell, snail or individual size

Rivermouth connection to ocean

USGS gage

DEFINITION OF VARIABLE

Climatic region of Puerto Rico were river is located

Site name identifying nearest bridge or road, or river mouth

Average measurement of shell, snail or individual size

Rivermouth connection to ocean throughout the year. Connection can be restricted by sandbar chocking or dewatering of coastal plain reaches. Connection can be maintained by high flows yearround. Re-connection of chocked rivermouths occur during seasonal (yearly flooding) or episodic (hurricanes, dam water release) flooding

USGS water quality station

UNIT

    millimeter  

 

PRECISION

    0.05

 

 

RANGE OR LIST OF VALUES

Noth, South, West, East

    P = Permanent, S = Seasonal, E = Episodic

50011400, 50027750, 50038100, 50039500, 50046000, 50048510, 50063800, 50071000, 50072500, 50082000, 50083500, 50091800, 50092000, 50106500, 50115000, 50129700, 50133600, 50138800, 50144000, 50146000, 50147600, 50149100

DATA TYPE

alphabetic   decimal  

integer

MISSING DATA CODES

       

Blank or NA

 COMPUTATIONAL METHODS:

Variable Name

Formula

Example:

 


FOR DATA MANAGER USE ONLY

DATE OF LAST RApril 14, 2009-->-->-->

DATE OF LAST ENTRY:January 9, 2003

STAGE OF DATA SET MANAGEMENT (dates):
RECEIVED: December 28, 2005
ENTERED: December 28, 2005
FILED ON-LINE: February 6, 2006
REVIEWED BY RESEARCHER:

FILING MEDIA :
NAME OF DOCUMENTATION FILE: lterdb141.htm
NAME OF ON - LINE CATALOG: LTERDBAS
RECORD #: 141


DOCUMENT TYPE: binary data only
PRIORITY TO BE ENTERED: N/A



Rev. date of this form: 28 July 200/ 15 July  2001/June 9, 2003/March 16, 2004/12 April 2005/ 8 November 2005