LUQ LTER DATA SETS DOCUMENTATION FORM
ON-LINE VERSION
A DATA SET is a series of observations collected by the same methodology. Each data set should have documentation sufficient for someone unfamiliar with the research to replicate the study. Data sets may be broken into subsets (data files) that are discrete in space and time, in that order. The documentation for a data set should include all spatial and temporal subdivisions of the data.
(Data, Abstract, Methods, Variables)
NOTES
| PERSON(S) COMPLETING THIS FORM: | E-MAIL ADDRESS: |
Juan Felipe Blanco L. |
DATA SET IDENTIFIER : Neritina snails hierarchical distribution
PROJECT TITLE : Physical habitat, disturbances, and the population ecology of the migratory snail Neritina virginea (Gastropoda: Neritidae) in streams of Puerto Rico (Community Ecology of Streams Snails)PROJECT DESCRIPTION :Diadromous fauna, migrating between marine and coastal streams is dominant in the neotropics. However, the factors controlling their population distribution and size are poorly understood. The migratory snail Neritina virginea (Gastropoda: Neritidae), abundant in estuaries and coastal rivers in the Caribbean, was studied to understand those factors. The objectives of the study were three-fold: 1) to identify the factors controlling the distribution of diadromous fauna at different spatial scales, 2) to determine patterns and causes of massive upstream migrations and their importance for population persistence, and 3) to integrate this knowledge into conservation strategies for migratory species and stream management plans.
After a survey of 32 coastal streams around Puerto Rico (Greater Antilles), it was evidenced that physical variables operating at different levels of the spatial hierarchy controlled longitudinal distribution of N. virginea. The hierarchically organized variables were river-ocean connectivity (regional scale), instream barriers and water chemistry (stream-network scale), habitat hydraulics (reach scale) and nearbed-flow roughness and depth (habitat scale). However, michohabitat scale distribution depended upon habitat and reach scale context. At habitat scale, water depth in pools, and nearbed flow roughness in riffles were the most important controls. At the reach scale, spatial heterogeneity among and within streambed patches was related to flow refugia, therefore controlling sensitivity of N. virginea density to flooding disturbances.
In addition, the role of structures (bridges) and maintenance activities (downstream channel realignment) associated to road crossings over streams was assessed. By splitting the stream channel and deflecting the flow, bridge pilings altered upstream migration routes. In particular, migratory individuals used more frequently boulder-and-cobble riffle reaches and avoided gravel-bed run reaches. Impact assessment of channel realignment over a 70 m reach in lower Rio Mameyes (NE Puerto Rico) showed that increase in frequency of fine sediment patches contributed to local population depletion and high mortality of juvenile individuals migrating upstream. As a consequence a population located 100 m upstream became isolated and did not recover from a crash caused by a major storm flood occurre after the channel realignment. In conclusion, distribution and size of populations of diadromous fauna such as N. virginea in coastal streams is influenced by hierarchically organized variables. By affecting variables at microhabitat to reach scales, road crossings over streams contribute to reduce longitudinal connectivity, and isolate upstream populations of N. virginea.LTER CORE AREAS: Annotate all that apply (See online list)
| Population dynamics |
|
Disturbance patterns |
LEF LTER 1 RESEARCH TOPIC: (Annotate all that apply) (See online list)
|
|
| Data File No. | Data File Identifier | On-Line Filename | Starting Date | Periodicity of sample | End Period |
| 1 |
microhabitat distribution at Mameyes upstream Route 3 |
microhabitatdistributionatMameyesupstreamRoute3.txt 3 | August 22, 2000 | weekly | December 12, 2000 |
| 2 | habitat distribution at Mameyes upstream Route 3 | habitatdistributionatMameyesupstreamRoute3.txt | August 22, 2000 | weekly | December 12, 2000 |
| 3 | Water chemistry and snail distribution at stream-networks | waterchemistryandsnaildistribution.txt | January 6, 2001 | Biannual | January 9, 2003 |
| 4 | Snail distribution around Puerto Rico | islanddistribution.txt | January 6, 2001 | Biannual | January 9, 2003 |
RESEARCH LOCATION: Rio Mameyes at intersection with PR Route 3 (Municipality boundary between Luquillo and Rio Grande), and 32 rivers around the island directly connected to the ocean
|
Juan Felipe Blanco L. |
|
Frederick N. Scatena |
|
Juan Felipe Blanco L. |
+57-4-210 5620 |
DATA SET ABSTRACT: This data set includes N. virginea densities and sizes relative to streambed substrate type, water depth, and habitat type in a low land reach in Rio Mameyes near PR Route 3 bridge, and presence and inland extent of distribution of in 32 coastal rivers around the island. Hydrologic and water chemistry variables are reported as predictors of snail distribution at regional and stream-network scales.
DATA SET METHODS: Snails were collected, counted, and measured within 0.5 x 0.5 m quadrats placed on the streambed as described in data set "Neritina snails upstream migrations": Snails on and under rocks were counted within 0.5 x 0.5 m quadrats (n=10) placed on the streambed on a weekly basis. Sampling quadrats were placed ˜1 m apart across the main channel (MC), and in five pairs along the side channel (SC). At SC, one quadrat of each pair was placed on the thalweg and another on the shallow part. In addition, a random sample of individuals was collected from each quadrat to measure shell size. Shell size was measured as aperture width (straight line running along the columnella from the base of the operculum to the shell shoulder on body whorl). Total length (TL, perpendicular to AW) is related to aperture width (AW) but cannot be measured in individuals with broken outer lips (TL=1.24AW+0.04, r2=0.98).
Four habitats (point-bar and straight channel pools, a riffle, and a high flow pond) in Rio Mameyes near Route 3 Bridge were weekly sampled between August and December 2000. Water depth and substrate type were measured within each quadrat. The three-most abundant substrates were classified as boulders, cobbles, pebbles, gravel or sand/fines. Plots covered >1/3 by Elodea were classified as “mats”. Nearbed water velocity was measured along cross-sections within each habitat as described in the data set "Neritina snails upstream migrations". In addition, the presence and inland extent of distribution of N. virginea were surveyed in 32 coastal rivers around the island during summer 2001 and 2003. Water chemistry and river discharge data were obtained from the US Geological Survey (http://nwis.waterdata.usgs.gov/usa/nwis/).
Pyron, M., and A. P. Covich. 2003. Migration patterns, densities and growth of Neritina punctulata snails in Rio Espíritu Santo and Rio Mameyes, Northeastern Puerto Rico. Caribbean Journal of Science 39:338-347.
Blanco, J. F. and F. N. Scatena. 2005. Floods, Habitat Hydraulics and Upstream Migration of Neritina virginea (Gastropoda: Neritidae) in Northeastern Puerto Rico. Caribbean Journal of Science, 41: 55-74
CROSS-REFERENCES (other data sets related to this one): LTERDB140: Neritina snails upstream migrations
SAMPLE LOCATION : NA
STORAGE SITES (of data files): ITES
INVESTIGATOR'S ASSIGNED KEYWORDS: freshwater gastropods, tropical streams, spatial hierarchies, landscape filters, downstream–upstream linkages
LEF LTER OFFICIAL KEYWORDS(See table):Q. Mameyes, river, discharge, population dynamics, carbon, nitrogen, phosphorus, cations, anions, other chemicals, environmental variables, human, aquatic gastropods (mollusks), dissertation, peer reviewed journal.
PUBLICATIONS :Blanco, J. F. 2005. Physical habitat, disturbances, and the population ecology of the migratory snail Neritina virginea (Gastropoda: Neritidae) in streams of Puerto Rico. Ph. D. Dissertation, University of Puerto Rico, Rio Piedras Campus, Department of Biology. 250 p.
Blanco, J. F. and F. N. Scatena. 2006. Hierarchical contribution of river–ocean connectivity, water chemistry, hydraulics, and substrate to the distribution of diadromous snails in Puerto Rican streams Journal of the North American Benthological Society, Vol. 25, No. 1
DISSEMINATION : UNRESTRICTED
RESTRICTED UNRESTRICTED
REASONS TO RESTRICT DATA IN THIS DATA SET BEYOND ITS TWO YEAR POLICY PERIOD*:
*WILL HAVE TO BE APPROVED BY AT LEAST ONE LUQ LTER PRINCIPAL INVESTIGATORS: N. Brokaw, A. LUGO
_X_ "File" copy only : Data Management will only file an electronic copy of the data file and its documentationGeographical positional system (GPS) Coordinates for each location:
|
location |
latitude |
longitude |
|
Rio Mameyes at intersection with road PR Route 3 (bridge 1771) |
18° 22' 27" N |
65° 45' 50" W |
File Name or # above (all in which the variable appears) |
1, 2 |
1, 2 |
1, 2 |
1, 2 |
1 |
1 |
AbbreviationAbbreviation(as it appears on the data file) |
DATE |
densityDate |
STAGELEVEL_ft |
HABITAT |
WATERDEPTH_cm |
SUBSTRATES |
Date of sampling |
Date of density calculation |
Stage level
|
Habitat |
Water depth |
Dominant substrates |
|
Date of sampling (mm/dd/yy) |
Date of density calculation (mm/dd/yy) |
Stage level at USGS gage 50066000 |
Channel unit with distinctive hydraulics and morphology at a scale of 101 m2 |
Water depth |
Three-most abundant substrate categories |
|
foot |
centimeter | |||||
0.02 |
0.1 | |||||
8/22/2000, 12/12/2002 |
8/22/2000,, 12/12/2002 |
0,… |
PB = point-bar pool, SC = straight-channel pool, HFP = high flow pond, R = riffle |
10.2,..,139.7 |
B = boulders; diameter >256 mm, C = cobbles; diameter 256–64 mm, P = pebbles; diameter 64–16 mm, G = gravel and finer; diameter <16 mm, M = Elodea mats |
|
| datetime | datetime | decimal |
alphabetic |
decimal |
alphanumeric |
|
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
1, 4 |
2 | 2 | 2 |
2 |
AbbreviationAbbreviation(as it appears on the data file) |
SNAILDENSITY_ind.-m2 |
SIZE-DATE | SIZE-STAGELEVEL_ft | SIZE-HABITAT |
SIZE_mm |
| snail density, mean snail density | Date of measurement |
Stage level when measured | Habitat when measured |
Shell, snail or individual size | |
| Number of individuals per m2 | Date in which snail sampled was measured (mm/dd/yy) |
Stage level at USGS gage 50066000 when measurement was performed | Observed channel unit with distinctive hydraulics and morphology at a scale of 101 m2 |
Measurement of shell, snail or individual size | |
| numberPerMeterSquared | foot | millimeter | |||
| 0.05 | |||||
| 0,... | PB = point-bar pool, SC = straight-channel pool, HFP = high flow pond, R = riffle |
||||
| decimal | datetime | decimal | alphabetic |
decimal | |
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
3, 4 |
3 |
3 |
3 |
AbbreviationAbbreviation(as it appears on the data file) |
RIVER |
USGSgage |
geoCoordinateLati_NAD27 |
geoCoordinateLong_NAD27 |
| River | USGS gage |
Geographic coordinates (Latitude) |
Geographic coordinates |
|
| River sampled for snail distribution and location of water chemistry or discharge station | USGS water quality station |
Geographic coordinate, Latitude, of USGS gages in study rivers (deg/min/sec) |
Geographic coordinates, Longitude, of USGS gages in study rivers |
|
|
degree minute second |
degree minute second |
||
|
|
|
||
| Yaguez,
Añasco, Culebrinas, Guajataca, Camuy, Arecibo, Manati, Cibuco, La Plata,
Bayamon (Hondo), Blasina, Loiza, Espiritu Santo, Mameyes, Sabana, Fajardo,
Blanco, Humacao, Guayanes, Maunabo, Patillas, Nigua, Guamani, Jueyes,
Coamo, Descalabrado, Cañas, Jacaguas, Portugues, Guayanilla, Loco, Guanajibo
|
50011400, 50027750, 50038100, 50039500, 50046000, 50048510, 50063800, 50071000, 50072500, 50082000, 50083500, 50091800, 50092000, 50106500, 50115000, 50129700, 50133600, 50138800, 50144000, 50146000, 50147600, 50149100 |
|
|
|
| alphabetic | integer |
alphanumeric |
alphanumeric |
|
Blank or NA |
|
|
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
3 |
3 |
3 |
3 |
3 |
AbbreviationAbbreviation(as it appears on the data file) |
drainageArea_mi2 |
gageDatum_ft_asl |
recordRange |
numberofEntries |
temperature_C |
Drainage area |
Gage datum |
Record range |
Number of sampling dates |
Temperature |
|
Drainage area above gage |
Elevation of gage above mean sea level NGVD29 |
Extent of years used to compute average water quality parameters from gage (yyyy-yyyy) |
Number of sampling dates available within record range used to compute variable average |
Average water temperature in Celsius degrees |
|
squareMile |
foot |
|
celsius |
||
|
|||||
0,… |
0,… |
1990 - 2001 |
2,.., 58 |
0,… |
|
decimal |
decimal |
alphanumeric |
integer |
decimal |
|
|
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
3, 4 |
3 |
3 |
3 |
3 |
AbbreviationAbbreviation(as it appears on the data file) |
discharge_m3-s |
turbidity_NTU |
conductivity_microS-cm |
dissolvedOxygen_mg-l |
dissolvedOxygenSaturation_% |
| River discharge |
Water Turbidity |
Water conductivity |
Dissolved oxygen concentration in water |
Dissolved oxygen saturation in water | |
| Average river discharge |
Average water turbidity |
Average water conductivity |
Average dissolved oxygen concentration |
Average percentage of dissolved oxygen saturation | |
| cubicMetersPerSecond |
nephelometric turbidity units (NTU) |
micro Siemens per centimeters |
milligramsPerLiter |
||
| 0, … |
0, … |
0, … |
0, … |
0,… | |
| decimal | decimal | decimal | decimal | decimal | |
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
3 |
3 |
3 |
3 |
3 |
AbbreviationAbbreviation(as it appears on the data file) |
pH |
acidNeutCapac_mgCaCO3-l |
totalSuspendedSolids_mg-l |
NH4_mg-l | NO2+NO3_mg-l |
|
Water pH |
Acid Neutralizing Capacity of water |
Concentration of total suspended solids in water |
Ammonium concentration in water | Nitrite+Nitrate concentration in water |
|
|
Average water pH |
Average Acid Neutralizing Capacity or Alcalinity |
Average concentration of total suspended solids |
Average NH4 concentration | Average NO2+NO3 >concentration |
|
|
milligramsPerLiter |
milligramsPerLiter |
milligramsPerLiter |
milligramsPerLiter |
||
|
0,... |
0,... |
0,... |
0, … | 0, … |
|
|
decimal |
decimal |
decimal |
decimal |
decimal |
|
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
3 |
3 |
3 |
3 |
3 |
AbbreviationAbbreviation(as it appears on the data file) |
P_mg-l |
Ca_mg-l |
Mg_mg-l | Na_mg-l |
K_mg-l |
|
Total phosphorus concentration in water |
Calcium concentration in water |
Magnesium concentration in water | Sodium concentration in water |
Potassium concentration in water |
|
|
Average P concentration |
Average Ca concentration |
Average Mg concentration | Average Na concentration |
Average K concentration |
|
milligramsPerLiter |
milligramsPerLiter |
milligramsPerLiter |
milligramsPerLiter |
milligramsPerLiter |
|
|
0, … |
0, … |
0, … |
0, … |
0, … |
|
decimal |
decimal |
decimal |
decimal |
decimal |
|
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
3 |
3 |
3 |
3 |
3 |
AbbreviationAbbreviation(as it appears on the data file) |
Cl_mg-l |
SO4_mg-l | SiO2_mg-l | SNAIL_POPULATIONS | INLAND_EXTENT |
|
Chloride concentration in water |
Sulphate concentration in water | Silicate concentration in water | Snail populations | Inland extent | |
|
Average Cl concentration |
Average SO4 concentration | Average SiO2 concentration | Presence or absence of snail populations in river documented in surveys in summers 2001 and 2003 | Inland extent of snail populations in river documented in surveys in summers 2001 and 2003 | |
milligramsPerLiter |
milligramsPerLiter |
milligramsPerLiter |
|||
0,... |
0,... |
0,... |
Present, Absent | Absent, Estuary/River mouth, Coastal Plain
Mountains |
|
decimal |
decimal |
decimal |
alphabetic | alphabetic | |
VARIABLES (ATTRIBUTES):
File Name or # above (all in which the variable appears) |
4 |
4 |
4 |
4 |
4 |
AbbreviationAbbreviation(as it appears on the data file) |
REGION | siteName | meanSnailSize_mm |
rivermouthConnecttoOcean | nearestUSGSgage |
| Region | Site name | Shell, snail or individual size | Rivermouth connection to ocean | USGS gage |
|
| Climatic region of Puerto Rico were river is located | Site name identifying nearest bridge or road, or river mouth | Average measurement of shell, snail or individual size | Rivermouth connection to ocean throughout the year. Connection can be restricted by sandbar chocking or dewatering of coastal plain reaches. Connection can be maintained by high flows yearround. Re-connection of chocked rivermouths occur during seasonal (yearly flooding) or episodic (hurricanes, dam water release) flooding |
USGS water quality station |
|
| millimeter |
|
||||
| 0.05 |
|
||||
| Noth, South, West, East | P = Permanent, S = Seasonal, E = Episodic | 50011400, 50027750, 50038100, 50039500, 50046000, 50048510, 50063800, 50071000, 50072500, 50082000, 50083500, 50091800, 50092000, 50106500, 50115000, 50129700, 50133600, 50138800, 50144000, 50146000, 50147600, 50149100 |
|||
| alphabetic | decimal | integer |
|||
Blank or NA |
COMPUTATIONAL METHODS:
Example: |
FOR DATA MANAGER USE ONLY
DATE OF LAST RApril 14, 2009-->-->-->DATE OF LAST ENTRY:January 9, 2003
STAGE OF DATA SET MANAGEMENT (dates):
RECEIVED: December 28, 2005
ENTERED: December 28, 2005
FILED ON-LINE: February 6, 2006
REVIEWED BY RESEARCHER:
FILING MEDIA :
NAME OF DOCUMENTATION FILE: lterdb141.htm
NAME OF ON - LINE CATALOG: LTERDBAS
RECORD #: 141