LUQ LTER DATA SETS DOCUMENTATION FORM

ON-LINE VERSION

A DATA SET is a series of observations collected by the same methodology. Each data set should have documentation sufficient for someone unfamiliar with the research to replicate the study. Data sets may be broken into subsets (data files) that are discrete in space and time, in that order. The documentation for a data set should include all spatial and temporal subdivisions of the data.

(Data, Abstract, Methods, Variables)

NOTES:

PERSON(S) COMPLETING THIS FORM:

E-MAIL ADDRESS:

Joanne M. Sharpe

Joannesharpe@email.com

Eda C. Meléndez-Colom

emelendez@lternet.edu

DATA SET IDENTIFIER: Canopy Trimming Experiment (CTE) Fern surveys

PROJECT TITLE: CTE

PROJECT DESCRIPTION: This long-term experiment will increase the frequency of simulated hurricane effects above background levels to once every six years. The experiment will determine effects of repeated disturbance of the forest canopy and increased detrital inputs to the forest floor on germination, growth, survival, nutrient cycling, soil conditions, and trophic structure. Climate change models predict increased frequency and intensity of Caribbean hurricanes (Emmanuel 1987, Goldenberg et al. 2001), and our goal is to ealuate predictions regarding the effects of an increased rate of hurricane disturbance on tabonuco forest (Sanford et al. 1991). The experiment also is designed to decouple the effects of canopy disturbance (e.g. , light levels, temperature, moisture, etc. ) from those of increased detrital inputs on rates of detrital processing and resultant community and ecosystem processes. Manipulations and measurements of detrital processing, SOM, and soil properties associated with SOM will continue for at least three more funding periods (until 2024). In the short-term, we will use faunal manipulations nested within the canopy trimming experiment to measure the strength of interactions between autotrophic and detrital food webs in the context of hurricane-like disturbance. These results will be directed specifically at parameterizing the Trophic Interaction Model. This experiment also will provide a physical and intellectual focal point for the project participants.
The Canopy Trimming Experiment has two parts: 1) a forest canopy manipulation with measurements of coupled changes in microclimate, structure, and biota and their associated impacts on ecosystem processes, and 2) specific manipulations of the biota that assess the importance of components of the food web.

CTE Ferns: The species composition and abundance of  all of the ferns on the CTE plots was done prior to the beginning of the survey.  Plant measurement subplots will be monitored at regular intervals and the experiment proceeds to detect changes in diversity and abundance. 

LTER CORE AREAS: (Annotate all that apply) (See online list)

Population Dynamics

Disturbance Patterns

LEF LTER 1 RESEARCH TOPIC: Annotate all that apply (See online list)

Spatial and temporal distribution of populations

We define a data file as a component of a data set. A data set can have only one data file or more. Basically, different data files have different data structures or format.
DATA SET FILES (SUBSETS):

Data File No.

Data File Identifier

On-Line Filename

Starting Date

Periodicity of sample

End Period

1

 CTE Ferns measurements

January 13, 2003

Annual

ongoing*

*Note: Projected ending Date: January 30, 2015

RESEARCH LOCATION: Block A: 30+ m West of western edge of Big Grid, on North and South side of Prieta stream, near Vogt old plots. Block B: 30+ m South of Big Grid, all plots along Oxcart Trail. Block C: 30+ m West of SE corner of Big Grid.

INVESTIGATORS:

PRINCIPAL INVESTIGATORS

E-MAIL ADDRESS

Joanne M. Sharpe

Joannesharpe@email.com

OTHER RESEARCHERS

E-MAIL ADDRESS

CONTACT PERSONS

Phone Number (Include area code)

E-MAIL ADDRESS

Joanne M. Sharpe

(207) 882-5989

Joannesharpe@email.com

SOURCE OF FUNDING (SPONSOR): NSF LTER

DATA SET ABSTRACT: Changes in fern diversity and abundance were monitored prior to and during the Canopy Trimming Experiment (CTE). The abundance of all terrestrial fern species on the CTE plots is recorded for each subplot at annual intervals in January. The fern abundance and diversity changes in response to the block locations, treatments and other experiments conducted on subplots will be evaluated as the experiment proceeds. All surveys are done by Joanne Sharpe alone unless otherwise noted in the Comments. Only Block B was surveyed in January 2005 as other blocks had only partially been manipulated. Note that Variable abbreviations for fields common to all CTE data are in CAPS.

DATA SET METHODS: Each fern individual is identified and counted in each subplot from the between-subplot walkways.

REFERENCES: N/A

CROSS-REFERENCES (other data sets related to this one): N/A

SAMPLE LOCATION: N/A

STORAGE SITES(of data files):The original field data set is stored in the offices of Joanne M. Sharpe; ITES

INVESTIGATOR'S ASSIGNED KEYWORDS: ferns, diversity, disturbance, productivity

LEF LTER OFFICIAL KEYWORDS (See table): EL VERDE, CTE blocks, TABONUCO, DISTURBANCE, FERNS, PEER REVIEWED JOURNAL

PUBLICATIONS:

DISSEMINATION:

RESTRICTED _X__ (CTE project personnel) UNRESTRICTED ___

REASONS TO RESTRICT DATA IN THIS DATA SET BEYOND ITS TWO YEAR POLICY PERIOD*:

*WILL HAVE TO BE APPROVED BY AT LEAST ONE LUQ LTER PRINCIPAL INVESTIGATORS: N. Brokaw, J. ZIMMERMAN, A. LUGO

FILING:
___ "File" copy only:Data Management will only file an electronic copy of the data file and its documentation
_X__ " Enter" data on-line:Data Management will be in charge of entering the data on computer files (Contact Eda C. Meléndez)

SITES DESCRIPTIONS: Block A: Elevation (340-360); aspect SW-facing; Location 30+ m West of western edge of Big Grid, on North and South side of Prieta stream, near Vogt old plots. Block B: Elevation (450-485); aspect W-SW facing; Location 30+ m South of Big Grid, all plots along Oxcart Trail. Block C: Elevation (435-480 m); aspect West-facing; Location 30+ m West of SE corner of Big Grid.

Geographical positional system (GPS) Coordinates for each location:

location

latitude

longitude

The following table displays the x and y coordinates in Puerto Rico Planar Coordinates:

BlockPlot

X

Y

A1

217379

54625

A2

217437

54631

A3

217423

54720

A4

217460

54684

B1

217824

54356

B2

217875

54344

B3

217913

54278

B4

217970

54217

C1

217878

54476

C2

217933

54476

C3

217998

54480

C4

218094

54544

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

1

1

1

1

Abbreviation(as it appears on the data file)

BLOCK

PLOT

SUBPLOT

Species

NAME OF VARIABLE

Block identifier

Plot Identifier

Subplot Identifier

Species Code

DEFINITION OF VARIABLE

Name given to a grouping of 4-like plots in one of three locations

Name given to a 20m X 20m plot of a Block

Name given to a 4.7m X 4.7m of a plot within a block

Six character genus and species code

UNIT

N/A

N/A

N/A

N/A

PRECISION

N/A

N/A

N/A

N/A

RANGE OR LIST OF VALUES

A = West of western edge of Big Grid plot
B = South of Big Grid
C =  West of SE

1,..., 4

1,..., 16

Six character genus and species code

UNIDENT = not identified

NONE = no ferns in subplot 

DATA TYPE

alphabetic

integer

integer

alphabetic

MISSING DATA CODES

none

none

none

none

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

1

1

1

1

Abbreviation(as it appears on the data file)

SpAb

DAY

MONTH

YR

NAME OF VARIABLE

Species abundance

Survey day

Survey month

Survey year

DEFINITION OF VARIABLE

Number of individuals of a given species in the subplot

Day of the month that the survey was conducted

Month in which the survey was conducted

Year in which the survey was conducted

UNIT

N/A

N/A

N/A

N/A

PRECISION

N/A

N/A

N/A

N/A

RANGE OR LIST OF VALUES

1-31

1-12

2003 ff.

DATA TYPE

integer

integer

integer

integer

MISSING DATA CODES

Must be present if plot monitored. If no ferns of that species present will be zero.

Must be present

Must be present

Must be present

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

1

1

1

1

Abbreviation(as it appears on the data file)

DATE

Notes

ExpN, ExpP, ExpS, ExpFL, ExpW

ExpType ExpTypeSub ExpDec ExpDecType

NAME OF VARIABLE

dd-mmm-yy

Notes

Experiments on subplot—yes or no

Experiment on subplot types

DEFINITION OF VARIABLE

Date of survey

Any comments about the plants or plots or observers

ExpN = None ExpP = Plant ExpS = Soil ExpFL = Fungi and leaf litter decomp ExpW = Wood decomp

Type of experiments on subplot info in each column experiment

UNIT

N/A

N/A

N/A

N/A

PRECISION

N/A

N/A

N/A

N/A

RANGE OR LIST OF VALUES

13-Jan-2003 ff.

N/A

For each column variable

0 = No

1 = Yes

ExpType:/Sub: S = Soil (1-5) N = none P = Plant (1-5) ExpDec: D = Decomp ExpDecType: FL = fungi and leaf litter W = wood litter

DATA TYPE

Alphanumeric

Alphabetic

Alphabetic

Alphanumeric

MISSING DATA CODES

Must be present

Blank if no notes

Must be present

Blank if decomp in ExpType/Sub Blank if not decomp in ExpDec/Type

VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

1

1

1

1

Abbreviation(as it appears on the data file)

TRT

TrtSeq

SumRec

SubSp

SubAb

NAME OF VARIABLE

Treatment descriptors

Summary record identifier

Number of fern species in  subplot

Count of fern individuals in subplot

DEFINITION OF VARIABLE

TRT = official name of the experimental treatment applied to the plot in which the subplot is located.

TRTSEQ = code for treatment that sequences them for analysis

There are a variable number of records for each subplot depending on the number of species. The first (alpha by species) is marked with an X and contains summary counts (SubSp and SubAb) for the subplot.

Count of fern species in subplot

Sum of all counts for all species records for the subplot.

UNIT

N/A

N/A

N/A

N/A

PRECISION

N/A

N/A

N/A

N/A

RANGE OR LIST OF VALUES

TRT: CONTROL REMOVE ADDITION DROP

TRTSEQ: 1REM 2DROP 3ADD 4CON

X if summary record Blank if not a summary record

N/A

N/A

DATA TYPE

Alphabetic

Alphabetic

Numeric

Numeric

MISSING DATA CODES

Must be present

Blank if missing

Blank if no X in SUMREC

Blank if no X in SUMREC

 VARIABLES (ATTRIBUTES):

File Name or # above (all in which the variable appears)

1

1

1

Abbreviation(as it appears on the data file)

TRIM

DETRITUS

EXDATE

NAME OF VARIABLE

Trim plot identifier

Detritus applied to plot identifier

Excel Date

DEFINITION OF VARIABLE

Identifies plots which have had canopy trimming treatments applied.

Identifies plots which have experimental detritus on them

Serial date, converted from DATE by assigning a format of Number/General in spreadsheet.

.

UNIT

N/A

N/A

N/A

PRECISION

N/A

N/A

N/A

RANGE OR LIST OF VALUES

1 if trimmed 0 if not trimmed

1 if present 0 if not present

N/A

DATA TYPE

Numeric

Numeric

Numeric

MISSING DATA CODES

Must be present

Must be present

Must be present

COMPUTATIONAL METHODS

Variable Name

Formula


FOR DATA MANAGER USE ONLY

DATE OF LAST REVIEW: March 13, 2007

DATE OF LAST ENTRY: January 6, 2007

STAGE OF DATA SET MANAGEMENT (dates):
RECEIVED: March 22, 2004
ENTERED: February 23, 2006
FILED ON-LINE: March 1, 2006
REVIEWED BY RESEARCHER:

FILING MEDIA:
NAME OF DOCUMENTATION FILE: lterdb144.htm, ctemetadata.doc
NAME OF ON - LINE CATALOG: LTERDBAS
RECORD #: 146
DOCUMENT TYPE: binary only
PRIORITY TO BE ENTERED: N/A

Rev. date of this form: 28 July 200/ 15 July  2001/June 9, 2003/March 16, 2004/12 April 2005/ 8 November 2005/ 16 January 2000